PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G25820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 225aa    MW: 24239.9 Da    PI: 8.3062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G25820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12250455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+++Ik+Lq
  OPUNC05G25820.1  2 SHIAVERNRRRQMNDHLKVLRSLTPAF---YIKRGDQASIIGGAIDFIKELQ 50
                     89************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.63E-13154No hitNo description
SuperFamilySSF474593.66E-17177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.958149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-13264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNDHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK  60
KRRQQPQPHL ISPASASGGS PSPTPSPRSL ITSCSPTACF SSGSSSAGSS SSISPNNKPQ  120
LQVAELAACC NSPMADVEAR ISGANVLLRT LSRRAPPVRI IALLESLHLE VLHLNITTMD  180
DTVLYSFVLK IGLDCHLSVD DLAMEVHQTF CCIMPPPPAA GHPDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370000.0AC137000.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0035I01, complete sequence.
GenBankAC1444550.0AC144455.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0086G17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638702.11e-121PREDICTED: transcription factor MUTE-like
SwissprotQ9M8K62e-71MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A0E0L6N71e-164A0A0E0L6N7_ORYPU; Uncharacterized protein
STRINGLOC_Os05g51820.11e-120(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-32bHLH family protein